ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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M0R6H0_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/M0R6H0_F1_nD2

M0R6H0_F1_nD2

UID: 003775476

AlphaFold

Range: 176-275
AlphaFold: AF-M0R6H0
UniProt: M0R6H0 (all domains)
Gene: AABR07004232.1

Protein: LINE-1 retrotransposable element ORF1 protein (LINE retrotransposable element 1) (LINE1 retrotransposable element 1)

3D Structure

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Related Domains

Browse other domains in Transposase_22 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyTransposase_22(304.9.1.5)

Pfam Families

PF02994Transposase_22

L1 transposable element RBD-like domain

ClanCL0221RRM

External Links

AlphaFold DB: M0R6H0 UniProt: M0R6H0

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 176-275