ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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E9PU03_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/E9PU03_F1_nD1

E9PU03_F1_nD1

UID: 003777260

AlphaFold

Range: 16-405,561-580,641-840
AlphaFold: AF-E9PU03
UniProt: E9PU03 (all domains)
Gene: Smg5

Protein: Nonsense-mediated mRNA decay factor

3D Structure

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Related Domains

Browse other domains in EST1_DNA_bind,EST1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyEST1_DNA_bind,EST1(109.4.1.148)

Pfam Families

PF10373EST1_DNA_bind

Est1 DNA/RNA binding domain

ClanCL0020TPR

Telomerase activating protein Est1

ClanCL0020TPR

External Links

AlphaFold DB: E9PU03 UniProt: E9PU03

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-405,561-580,641-840