ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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D3ZQ80_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/D3ZQ80_F1_nD1

D3ZQ80_F1_nD1

UID: 003777444

AlphaFold

Range: 6-15,41-80,132-355,406-490
AlphaFold: AF-D3ZQ80
UniProt: D3ZQ80 (all domains)
Gene: Smg8

Protein: Nonsense-mediated mRNA decay factor SMG8

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySmg8_Smg9(2004.1.1.171)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: D3ZQ80 UniProt: D3ZQ80

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-15,41-80,132-355,406-490