ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

D3ZDI9_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/D3ZDI9_F1_nD1

D3ZDI9_F1_nD1

UID: 003777565

AlphaFold

Range: 22-90,131-169
AlphaFold: AF-D3ZDI9
UniProt: D3ZDI9 (all domains)
Gene: Usp13

Protein: Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-UBP_var →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP_var(376.1.1.32)

Pfam Families

PF17807zf-UBP_var

Variant UBP zinc finger

ClanCL0229RING

External Links

AlphaFold DB: D3ZDI9 UniProt: D3ZDI9

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 22-90,131-169