ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D8PJ08_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A0A1D8PJ08_F1_nD3

A0A1D8PJ08_F1_nD3

UID: 003788825

AlphaFold

Range: 396-620
AlphaFold: AF-A0A1D8PJ08
UniProt: A0A1D8PJ08 (all domains)
Gene: CAALFM_C300830CA

Protein: DNA ligase (EC 6.5.1.1)

3D Structure

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Related Domains

Browse other domains in DNA_ligase_A_M →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDNA_ligase_A_M(206.1.3.1)

Pfam Families

PF01068DNA_ligase_A_M

ATP dependent DNA ligase domain

ClanCL0179ATP-grasp

External Links

AlphaFold DB: A0A1D8PJ08 UniProt: A0A1D8PJ08

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 396-620