ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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F4IFN6_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/F4IFN6_F1_nD1

F4IFN6_F1_nD1

UID: 003802227

AlphaFold

Range: 16-715,781-935
AlphaFold: AF-F4IFN6
UniProt: F4IFN6 (all domains)
Gene: POL2B

Protein: DNA polymerase epsilon catalytic subunit B (EC 2.7.7.7) (DNA polymerase 2 b) (AtPOL2b) (DNA polymerase II subunit b) (Protein TILTED 2)

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_exo1, DNA_pol_B_exo2 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_B_exo1, DNA_pol_B_exo2(2484.1.1.197)

Pfam Families

PF03104DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

ClanCL0219RNase_H

PF10108DNA_pol_B_exo2

Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

ClanCL0219RNase_H

External Links

AlphaFold DB: F4IFN6 UniProt: F4IFN6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-715,781-935