ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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F4K1B1_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/F4K1B1_F1_nD1

F4K1B1_F1_nD1

UID: 003803785

AlphaFold

Range: 6-130
AlphaFold: AF-F4K1B1
UniProt: F4K1B1 (all domains)
Gene: At5g26760

Protein: Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog)

3D Structure

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Related Domains

Browse other domains in RPAP2_Rtr1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRegulator of transcription protein Rtr1(3371)

HH-groupRegulator of transcription protein Rtr1(3371.1)

TT-groupRegulator of transcription protein Rtr1(3371.1.1)

FFamilyRPAP2_Rtr1(3371.1.1.1)

Pfam Families

PF04181RPAP2_Rtr1

Rtr1/RPAP2 family

External Links

AlphaFold DB: F4K1B1 UniProt: F4K1B1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-130