ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9FJR0_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q9FJR0_F1_nD1

Q9FJR0_F1_nD1

UID: 003808705

AlphaFold

Range: 136-200
AlphaFold: AF-Q9FJR0
UniProt: Q9FJR0 (all domains)
Gene: UPF1

Protein: Regulator of nonsense transcripts 1 homolog (EC 3.6.4.12) (EC 3.6.4.13) (ATP-dependent helicase UPF1)

3D Structure

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Related Domains

Browse other domains in UPF1_Zn_bind →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyUPF1_Zn_bind(376.1.1.14)

Pfam Families

PF09416UPF1_Zn_bind

RNA helicase (UPF2 interacting domain)

ClanCL0229RING

External Links

AlphaFold DB: Q9FJR0 UniProt: Q9FJR0

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 136-200