ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q500X1_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q500X1_F1_nD2

Q500X1_F1_nD2

UID: 003809922

AlphaFold

Range: 71-155
AlphaFold: AF-Q500X1
UniProt: Q500X1 (all domains)
Gene: At4g32175

Protein: Ribosomal RNA-processing protein 40

3D Structure

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Related Domains

Browse other domains in RRP40_S1 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyRRP40_S1(2.1.1.107)

Pfam Families

PF21262RRP40_S1

Exosome complex component RRP40, S1 domain

ClanCL0021OB

External Links

AlphaFold DB: Q500X1 UniProt: Q500X1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 71-155