ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

C5H8J1_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/C5H8J1_F1_nD3

C5H8J1_F1_nD3

UID: 003813561

AlphaFold

Range: 436-533
AlphaFold: AF-C5H8J1
UniProt: C5H8J1 (all domains)
Gene: EME1B

Protein: Crossover junction endonuclease EME1B (EC 3.1.22.-) (Essential meiotic endonuclease 1B) (AtEME1B)

3D Structure

Loading viewer...

Related Domains

Browse other domains in EME1-MUS81_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyEME1-MUS81_C(102.1.1.41)

Pfam Families

PF21292EME1-MUS81_C

EME1/MUS81, C-terminal

ClanCL0198HHH

External Links

AlphaFold DB: C5H8J1 UniProt: C5H8J1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 436-533