ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9M1E8_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9M1E8_F1_nD2

Q9M1E8_F1_nD2

UID: 003813613

AlphaFold

Range: 116-235
AlphaFold: AF-Q9M1E8
UniProt: Q9M1E8 (all domains)
Gene: SEN1

Protein: tRNA-splicing endonuclease subunit Sen2-1 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-1) (AtSen1)

3D Structure

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Related Domains

Browse other domains in tRNA_int_endo →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-grouptRNA-intron endonuclease catalytic domain-like(2008.2)

TT-grouptRNA-intron endonuclease catalytic domain-like(2008.2.1)

FFamilytRNA_int_endo(2008.2.1.1)

Pfam Families

PF01974tRNA_int_endo

tRNA intron endonuclease, catalytic C-terminal domain

ClanCL0236PDDEXK

External Links

AlphaFold DB: Q9M1E8 UniProt: Q9M1E8

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 116-235