ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5XEN5_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5XEN5_F1_nD2

Q5XEN5_F1_nD2

UID: 003814911

AlphaFold

Range: 116-180
AlphaFold: AF-Q5XEN5
UniProt: Q5XEN5 (all domains)
Gene: MBD1

Protein: Methyl-CpG-binding domain-containing protein 1 (AtMBD1) (MBD01) (Methyl-CpG-binding protein MBD1)

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA-binding domain(252)

HH-groupMethyl-CpG-binding domain, MBD(252.1)

TT-groupMethyl-CpG-binding domain, MBD(252.1.1)

FFamilyMBD(252.1.1.1)

Pfam Families

Methyl-CpG binding domain

ClanCL0081MBD-like

External Links

AlphaFold DB: Q5XEN5 UniProt: Q5XEN5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 116-180