ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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F4IWM0_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/F4IWM0_F1_nD2

F4IWM0_F1_nD2

UID: 003816299

AlphaFold

Range: 268-330
AlphaFold: AF-F4IWM0
UniProt: F4IWM0 (all domains)
Gene: At3g42723

Protein: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein

3D Structure

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Related Domains

Browse other domains in Retrotrans_gag →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyRetrotrans_gag(170.2.1.12)

Pfam Families

PF03732PEG10_N-capsid

Retrotransposon-derived protein PEG10, N-terminal capsid-like domain

ClanCL0523GAG-polyprotein

External Links

AlphaFold DB: F4IWM0 UniProt: F4IWM0

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 268-330