ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

O49408_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/O49408_F1_nD1

O49408_F1_nD1

UID: 003826766

AlphaFold

Range: 22-195
AlphaFold: AF-O49408
UniProt: O49408 (all domains)
Gene: At4g18940

Protein: RNA ligase/cyclic nucleotide phosphodiesterase family protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in 2_5_RNA_ligase2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLigT-like(264)

HH-groupLigT-related(264.1)

TT-groupLigT-related(264.1.1)

FFamily2_5_RNA_ligase2(264.1.1.9)

Pfam Families

PF135632_5_RNA_ligase2

2'-5' RNA ligase superfamily

ClanCL02472H

External Links

AlphaFold DB: O49408 UniProt: O49408

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 22-195