ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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F4J8K6_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/F4J8K6_F1_nD3

F4J8K6_F1_nD3

UID: 003827540

AlphaFold

Range: 301-385
AlphaFold: AF-F4J8K6
UniProt: F4J8K6 (all domains)
Gene: RRP5

Protein: rRNA biogenesis protein RRP5 (AtRrp5) (Ribosomal RNA-processing protein 5)

3D Structure

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Related Domains

Browse other domains in S1_RRP5 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyS1_RRP5(2.1.1.177)

Pfam Families

PF23459S1_RRP5

RRP5 S1 domain

ClanCL0021OB

External Links

AlphaFold DB: F4J8K6 UniProt: F4J8K6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 301-385