ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

F4J8K6_F1_nD11 - ECOD Domain | ECOD

ECOD/Domains/F4J8K6_F1_nD11

F4J8K6_F1_nD11

UID: 003827542

AlphaFold

Range: 1051-1135
AlphaFold: AF-F4J8K6
UniProt: F4J8K6 (all domains)
Gene: RRP5

Protein: rRNA biogenesis protein RRP5 (AtRrp5) (Ribosomal RNA-processing protein 5)

3D Structure

Loading viewer...

Related Domains

Browse other domains in OB_PDCD11 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyOB_PDCD11(2.1.1.226)

Pfam Families

PF29086OB_PDCD11

Protein RRP5 homolog-like, OB domain

ClanCL0021OB

External Links

AlphaFold DB: F4J8K6 UniProt: F4J8K6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1051-1135