ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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F4J8K6_F1_nD5 - ECOD Domain | ECOD

ECOD/Domains/F4J8K6_F1_nD5

F4J8K6_F1_nD5

UID: 003827567

AlphaFold

Range: 481-565
AlphaFold: AF-F4J8K6
UniProt: F4J8K6 (all domains)
Gene: RRP5

Protein: rRNA biogenesis protein RRP5 (AtRrp5) (Ribosomal RNA-processing protein 5)

3D Structure

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Related Domains

Browse other domains in S1 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyS1(2.1.1.7)

Pfam Families

S1 RNA binding domain

ClanCL0021OB

External Links

AlphaFold DB: F4J8K6 UniProt: F4J8K6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 481-565