ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q500X1_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q500X1_F1_nD1

Q500X1_F1_nD1

UID: 003830202

AlphaFold

Range: 6-70
AlphaFold: AF-Q500X1
UniProt: Q500X1 (all domains)
Gene: At4g32175

Protein: Ribosomal RNA-processing protein 40

3D Structure

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Related Domains

Browse other domains in Rrp40_N →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupRibosomal L27 protein(325.1.8)

FFamilyRrp40_N(325.1.8.3)

Pfam Families

PF18311Rrp40_N

Exosome complex exonuclease Rrp40 N-terminal domain

ClanCL0105Hybrid

External Links

AlphaFold DB: Q500X1 UniProt: Q500X1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-70