ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8RX28_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8RX28_F1_nD1

Q8RX28_F1_nD1

UID: 003831536

AlphaFold

Range: 16-393
AlphaFold: AF-Q8RX28
UniProt: Q8RX28 (all domains)
Gene: HDA5

Protein: Histone deacetylase 5 (EC 3.5.1.98)

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

AlphaFold DB: Q8RX28 UniProt: Q8RX28

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-393