ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9SG02_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q9SG02_F1_nD1

Q9SG02_F1_nD1

UID: 003834163

AlphaFold

Range: 1-120,231-250,466-480
AlphaFold: AF-Q9SG02
UniProt: Q9SG02 (all domains)
Gene: RDR6

Protein: RNA-dependent RNA polymerase 6 (AtRDRP6) (EC 2.7.7.48) (Protein SILENCING DEFECTIVE 1) (Protein SUPPRESSOR OF GENE SILENCING 2) (RNA-directed RNA polymerase 6)

3D Structure

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Related Domains

Browse other domains in RBD_RDR6 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRBD_RDR6(304.9.1.98)

Pfam Families

PF24572RBD_RDR6

RNA-dependent RNA polymerase 6, RNA-binding domain

ClanCL0221RRM

External Links

AlphaFold DB: Q9SG02 UniProt: Q9SG02

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-120,231-250,466-480