ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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C5H8J1_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/C5H8J1_F1_nD2

C5H8J1_F1_nD2

UID: 003835911

AlphaFold

Range: 241-430
AlphaFold: AF-C5H8J1
UniProt: C5H8J1 (all domains)
Gene: EME1B

Protein: Crossover junction endonuclease EME1B (EC 3.1.22.-) (Essential meiotic endonuclease 1B) (AtEME1B)

3D Structure

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Related Domains

Browse other domains in ERCC4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyERCC4(2008.1.1.7)

Pfam Families

ERCC4 domain

ClanCL0236PDDEXK

External Links

AlphaFold DB: C5H8J1 UniProt: C5H8J1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 241-430