ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O82504_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/O82504_F1_nD1

O82504_F1_nD1

UID: 003837830

RepresentativeAlphaFold

Range: 6-95,206-215
AlphaFold: AF-O82504
UniProt: O82504 (all domains)
Gene: RDR2

Protein: RNA-dependent RNA polymerase 2 (AtRDRP2) (EC 2.7.7.48) (Protein SILENCING MOVEMENT DEFICIENT 1) (RNA-directed RNA polymerase 2)

3D Structure

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Related Domains

Browse other domains in RRM_RdRP1_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_RdRP1_2(304.9.1.96)

Pfam Families

PF26250RRM_RdRP1_2

RdRP1/2, RRM domain

ClanCL0221RRM

External Links

AlphaFold DB: O82504 UniProt: O82504

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-95,206-215