ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O25260_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/O25260_F1_nD2

O25260_F1_nD2

UID: 003839530

RepresentativeAlphaFold

Range: 186-635,656-735
AlphaFold: AF-O25260
UniProt: O25260 (all domains)
Gene: HP_0524

Protein: Cag pathogenicity island protein (Cag5)

3D Structure

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Related Domains

Browse other domains in T4SS-DNA_transf, TraG-D_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyT4SS-DNA_transf, TraG-D_C(2004.1.1.552)

Pfam Families

PF02534T4SS-DNA_transf

Type IV secretory system Conjugative DNA transfer

ClanCL0023P-loop_NTPase

PF12696TraG-D_C

TraM recognition site of TraD and TraG

ClanCL0023P-loop_NTPase

External Links

AlphaFold DB: O25260 UniProt: O25260

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 186-635,656-735