ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P56185_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/P56185_F1_nD2

P56185_F1_nD2

UID: 003839549

AlphaFold

Range: 136-340,501-585
AlphaFold: AF-P56185
UniProt: P56185 (all domains)
Gene: rnj

Protein: Ribonuclease J (RNase J) (EC 3.1.-.-)

3D Structure

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Related Domains

Browse other domains in Lactamase_B,RMMBL →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B,RMMBL(247.1.1.2)

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

Zn-dependent metallo-hydrolase RNA specificity domain

ClanCL0398RMMBL_DRMBL

External Links

AlphaFold DB: P56185 UniProt: P56185

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 136-340,501-585