ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5SWD9_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5SWD9_F1_nD3

Q5SWD9_F1_nD3

UID: 003846718

AlphaFold

Range: 486-540,581-690
AlphaFold: AF-Q5SWD9
UniProt: Q5SWD9 (all domains)
Gene: Tsr1

Protein: Pre-rRNA-processing protein TSR1 homolog

3D Structure

Loading viewer...

Related Domains

Browse other domains in RIBIOP_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAminomethyltransferase beta-barrel domain(1.1.8)

FFamilyRIBIOP_C(1.1.8.2)

Pfam Families

PF04950RIBIOP_C

40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

ClanCL0866ALR_C-like

External Links

AlphaFold DB: Q5SWD9 UniProt: Q5SWD9

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 486-540,581-690