ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

O88974_F1_nD5 - ECOD Domain | ECOD

ECOD/Domains/O88974_F1_nD5

O88974_F1_nD5

UID: 003855047

AlphaFold

Range: 591-685
AlphaFold: AF-O88974
UniProt: O88974 (all domains)
Gene: Setdb1

Protein: Histone-lysine N-methyltransferase SETDB1 (EC 2.1.1.366) (ERG-associated protein with SET domain) (ESET) (SET domain bifurcated 1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in MBD →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA-binding domain(252)

HH-groupMethyl-CpG-binding domain, MBD(252.1)

TT-groupMethyl-CpG-binding domain, MBD(252.1.1)

FFamilyMBD(252.1.1.1)

Pfam Families

Methyl-CpG binding domain

ClanCL0081MBD-like

External Links

AlphaFold DB: O88974 UniProt: O88974

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 591-685