ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P56399_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/P56399_F1_nD2

P56399_F1_nD2

UID: 003857458

AlphaFold

Range: 176-285
AlphaFold: AF-P56399
UniProt: P56399 (all domains)
Gene: Usp5

Protein: Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (Isopeptidase T) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5)

3D Structure

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Related Domains

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Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP(376.1.1.5)

Pfam Families

Zn-finger in ubiquitin-hydrolases and other protein

ClanCL0229RING

External Links

AlphaFold DB: P56399 UniProt: P56399

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 176-285