ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5BKP2_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/Q5BKP2_F1_nD4

Q5BKP2_F1_nD4

UID: 003863007

AlphaFold

Range: 646-710
AlphaFold: AF-Q5BKP2
UniProt: Q5BKP2 (all domains)
Gene: Usp13

Protein: Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.4.19.12) (Deubiquitinating enzyme 13) (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13)

3D Structure

Loading viewer...

Related Domains

Browse other domains in UBA_7 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupRuvA-C(103)

HH-groupRuvA-C, UBA, CRAL/TRIO-N, HBS1(103.1)

TT-groupUBA-like domain(103.1.1)

FFamilyUBA_7(103.1.1.27)

Pfam Families

UBA-like domain

ClanCL0214UBA

External Links

AlphaFold DB: Q5BKP2 UniProt: Q5BKP2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 646-710