ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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F1QKG2_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/F1QKG2_F1_nD3

F1QKG2_F1_nD3

UID: 003877724

AlphaFold

Range: 356-480
AlphaFold: AF-F1QKG2
UniProt: F1QKG2 (all domains)
Gene: ptbp1b

Protein: Polypyrimidine tract-binding protein 1

3D Structure

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Related Domains

Browse other domains in RRM_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_5(304.9.1.23)

Pfam Families

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

ClanCL0221RRM

External Links

AlphaFold DB: F1QKG2 UniProt: F1QKG2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 356-480