ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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F1R9L1_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/F1R9L1_F1_nD2

F1R9L1_F1_nD2

UID: 003893226

AlphaFold

Range: 496-540
AlphaFold: AF-F1R9L1
UniProt: F1R9L1 (all domains)
Gene: sema5a

Protein: Sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A (Semaphorin-5A isoform X1)

3D Structure

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Related Domains

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Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupTrefoil/Plexin domain-like(355)

HH-groupTrefoil/Plexin domain-like(355.1)

TT-groupTrefoil/Plexin domain-like(355.1.1)

FFamilyPSI(355.1.1.2)

Pfam Families

Plexin repeat

ClanCL0630PSI

External Links

AlphaFold DB: F1R9L1 UniProt: F1R9L1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 496-540