ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A0R4IZ84_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A0R4IZ84_F1_nD1

A0A0R4IZ84_F1_nD1

UID: 003904342

AlphaFold

Range: 686-950,996-1290,1331-1360
AlphaFold: AF-A0A0R4IZ84
UniProt: A0A0R4IZ84 (all domains)
Gene: smg6

Protein: Telomerase-binding protein EST1A (EC 3.1.-.-) (Ever shorter telomeres 1A) (Nonsense mediated mRNA decay factor SMG6) (Smg-6 homolog)

3D Structure

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Related Domains

Browse other domains in EST1_DNA_bind,EST1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyEST1_DNA_bind,EST1(109.4.1.148)

Pfam Families

PF10373EST1_DNA_bind

Est1 DNA/RNA binding domain

ClanCL0020TPR

Telomerase activating protein Est1

ClanCL0020TPR

External Links

AlphaFold DB: A0A0R4IZ84 UniProt: A0A0R4IZ84

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 686-950,996-1290,1331-1360