ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q6DEF6_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q6DEF6_F1_nD1

Q6DEF6_F1_nD1

UID: 003913480

AlphaFold

Range: 91-275
AlphaFold: AF-Q6DEF6
UniProt: Q6DEF6 (all domains)
Gene: usb1

Protein: U6 snRNA phosphodiesterase 1 (3'-5' RNA exonuclease USB1) (EC 4.6.1.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in HVSL →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLigT-like(264)

HH-groupLigT-related(264.1)

TT-groupLigT-related(264.1.1)

FFamilyHVSL(264.1.1.6)

Pfam Families

Uncharacterised conserved protein

ClanCL02472H

External Links

AlphaFold DB: Q6DEF6 UniProt: Q6DEF6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 91-275