ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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F1R7R1_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/F1R7R1_F1_nD1

F1R7R1_F1_nD1

UID: 003916208

AlphaFold

Range: 6-410,726-890
AlphaFold: AF-F1R7R1
UniProt: F1R7R1 (all domains)
Gene: smg5

Protein: Nonsense-mediated mRNA decay factor SMG5 (EST1-like protein B) (SMG-5 homolog)

3D Structure

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Related Domains

Browse other domains in EST1_DNA_bind,EST1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyEST1_DNA_bind,EST1(109.4.1.148)

Pfam Families

PF10373EST1_DNA_bind

Est1 DNA/RNA binding domain

ClanCL0020TPR

Telomerase activating protein Est1

ClanCL0020TPR

External Links

AlphaFold DB: F1R7R1 UniProt: F1R7R1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-410,726-890