ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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I6Y9J2_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/I6Y9J2_F1_nD3

I6Y9J2_F1_nD3

UID: 003951501

AlphaFold

Range: 251-405
AlphaFold: AF-I6Y9J2
UniProt: I6Y9J2 (all domains)
Gene: ldtB

Protein: L,D-transpeptidase 2 (LDT 2) (EC 2.3.2.-) (Ldt(Mt2))

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

AlphaFold DB: I6Y9J2 UniProt: I6Y9J2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 251-405