ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

O53638_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/O53638_F1_nD2

O53638_F1_nD2

UID: 003952167

AlphaFold

Range: 121-250
AlphaFold: AF-O53638
UniProt: O53638 (all domains)
Gene: ldtA

Protein: L,D-transpeptidase 1 (LDT 1) (EC 2.3.2.-) (Ldt(Mt1))

3D Structure

Loading viewer...

Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

AlphaFold DB: O53638 UniProt: O53638

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 121-250