ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F9M1_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5F9M1_F1_nD1

Q5F9M1_F1_nD1

UID: 003963221

AlphaFold

Range: 31-135,226-274
AlphaFold: AF-Q5F9M1
UniProt: Q5F9M1 (all domains)
Gene: NGO_0372

Protein: Amino acid ABC transporter substrate-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

AlphaFold DB: Q5F9M1 UniProt: Q5F9M1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 31-135,226-274