ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F4Y3_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5F4Y3_F1_nD2

Q5F4Y3_F1_nD2

UID: 003963512

AlphaFold

Range: 71-240
AlphaFold: AF-Q5F4Y3
UniProt: Q5F4Y3 (all domains)
Gene: NGO_2160

Protein: Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.193)

3D Structure

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Related Domains

Browse other domains in Methyltrans_RNA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrans_RNA(2488.1.1.12)

Pfam Families

PF04452Methyltrans_RNA

RNA methyltransferase domain

ClanCL0098SPOUT

External Links

AlphaFold DB: Q5F4Y3 UniProt: Q5F4Y3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 71-240