ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F805_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5F805_F1_nD3

Q5F805_F1_nD3

UID: 003963569

AlphaFold

Range: 476-635
AlphaFold: AF-Q5F805
UniProt: Q5F805 (all domains)
Gene: rpoD

Protein: RNA polymerase sigma factor RpoD (Sigma-70)

3D Structure

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Related Domains

Browse other domains in Sigma70_r3,Sigma70_r4 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySigma70_r3,Sigma70_r4(101.1.1.30)

Pfam Families

PF04539Sigma70_r3

Sigma-70 region 3

ClanCL0123HTH

PF04545Sigma70_r4

Sigma-70, region 4

ClanCL0123HTH

External Links

AlphaFold DB: Q5F805 UniProt: Q5F805

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 476-635