ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5F805_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5F805_F1_nD2

Q5F805_F1_nD2

UID: 003963570

AlphaFold

Range: 116-475
AlphaFold: AF-Q5F805
UniProt: Q5F805 (all domains)
Gene: rpoD

Protein: RNA polymerase sigma factor RpoD (Sigma-70)

3D Structure

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Related Domains

Browse other domains in Sigma70_r1_2,Sigma70_r2,Sigma70_ner →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSigma2 domain-like(142)

HH-groupSigma2 domain of RNA polymerase sigma factors(142.1)

TT-groupSigma2 domain of RNA polymerase sigma factors(142.1.1)

FFamilySigma70_r1_2,Sigma70_r2,Sigma70_ner(142.1.1.2)

Pfam Families

PF00140Sigma70_r1_2

Sigma-70 factor, region 1.2

PF04542Sigma70_r2

Sigma-70 region 2

ClanCL0123HTH

PF04546Sigma70_ner

Sigma-70, non-essential region

ClanCL0123HTH

External Links

AlphaFold DB: Q5F805 UniProt: Q5F805

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 116-475