ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F805_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5F805_F1_nD1

Q5F805_F1_nD1

UID: 003963584

AlphaFold

Range: 21-110
AlphaFold: AF-Q5F805
UniProt: Q5F805 (all domains)
Gene: rpoD

Protein: RNA polymerase sigma factor RpoD (Sigma-70)

3D Structure

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Related Domains

Browse other domains in Sigma70_r1_1 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupRNA polymerase sigma factor rpoD N-terminal domain(3498)

HH-groupRNA polymerase sigma factor rpoD N-terminal domain(3498.1)

TT-groupRNA polymerase sigma factor rpoD N-terminal domain(3498.1.1)

FFamilySigma70_r1_1(3498.1.1.2)

Pfam Families

PF03979Sigma70_r1_1

Sigma-70 factor, region 1.1

External Links

AlphaFold DB: Q5F805 UniProt: Q5F805

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-110