ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A0H4IVJ6_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A0A0H4IVJ6_F1_nD2

A0A0H4IVJ6_F1_nD2

UID: 003964077

AlphaFold

Range: 1-30,96-255
AlphaFold: AF-A0A0H4IVJ6
UniProt: A0A0H4IVJ6 (all domains)
Gene: NGO_09380

Protein: RNA polymerase sigma factor

3D Structure

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Related Domains

Browse other domains in Sigma54_CBD →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupSigma54 core-binding domain(101.1.20)

FFamilySigma54_CBD(101.1.20.1)

Pfam Families

PF04963Sigma54_CBD

Sigma-54 factor, core binding domain

ClanCL0123HTH

External Links

AlphaFold DB: A0A0H4IVJ6 UniProt: A0A0H4IVJ6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-30,96-255