ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5F5Y5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5F5Y5_F1_nD1

Q5F5Y5_F1_nD1

UID: 003964268

AlphaFold

Range: 11-75
AlphaFold: AF-Q5F5Y5
UniProt: Q5F5Y5 (all domains)
Gene: NGO_1783

Protein: Pseudouridine synthase (EC 5.4.99.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in S4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupAlpha-L RNA-binding motif(221.1.2)

FFamilyS4(221.1.2.5)

Pfam Families

S4 domain

ClanCL0492S4

External Links

AlphaFold DB: Q5F5Y5 UniProt: Q5F5Y5

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-75