ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F880_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5F880_F1_nD3

Q5F880_F1_nD3

UID: 003964806

AlphaFold

Range: 96-270
AlphaFold: AF-Q5F880
UniProt: Q5F880 (all domains)
Gene: NGO_0881

Protein: Integrase

3D Structure

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Related Domains

Browse other domains in rve, rve_2 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve, rve_2(2484.1.1.202)

Pfam Families

Integrase core domain

ClanCL0219RNase_H

Integrase core domain

ClanCL0219RNase_H

External Links

AlphaFold DB: Q5F880 UniProt: Q5F880

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 96-270