ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5F9D7_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5F9D7_F1_nD1

Q5F9D7_F1_nD1

UID: 003965071

AlphaFold

Range: 6-85
AlphaFold: AF-Q5F9D7
UniProt: Q5F9D7 (all domains)
Gene: NGO_0462

Protein: Integrase

3D Structure

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Related Domains

Browse other domains in Arm-DNA-bind_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA-binding domain(252)

HH-groupGCC-box binding domain-like(252.2)

TT-groupGCC-box binding domain-like(252.2.1)

FFamilyArm-DNA-bind_3(252.2.1.5)

Pfam Families

PF13356Arm-DNA-bind_3

Arm DNA-binding domain

ClanCL0081MBD-like

External Links

AlphaFold DB: Q5F9D7 UniProt: Q5F9D7

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-85