ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P49988_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P49988_F1_nD1

P49988_F1_nD1

UID: 003973125

AlphaFold

Range: 21-50
AlphaFold: AF-P49988
UniProt: P49988 (all domains)
Gene: rpoN

Protein: RNA polymerase sigma-54 factor

3D Structure

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Related Domains

Browse other domains in Sigma54_AID →

Classification

AArchitectureextended segments(a.20)

XX-groupRNA polymerase sigma-54 factor N-terminal region(1004)

HH-groupRNA polymerase sigma-54 factor N-terminal region(1004.1)

TT-groupRNA polymerase sigma-54 factor N-terminal region(1004.1.1)

FFamilySigma54_AID(1004.1.1.1)

Pfam Families

PF00309Sigma54_AID

Sigma-54 factor, Activator interacting domain (AID)

External Links

AlphaFold DB: P49988 UniProt: P49988

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-50