ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q8ZQB5_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q8ZQB5_F1_nD3

Q8ZQB5_F1_nD3

UID: 003974932

AlphaFold

Range: 366-610
AlphaFold: AF-Q8ZQB5
UniProt: Q8ZQB5 (all domains)
Gene: ycbB

Protein: Periplasmic protein

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

AlphaFold DB: Q8ZQB5 UniProt: Q8ZQB5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 366-610