ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q8DNE3_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q8DNE3_F1_nD2

Q8DNE3_F1_nD2

UID: 003989101

AlphaFold

Range: 101-250
AlphaFold: AF-Q8DNE3
UniProt: Q8DNE3 (all domains)
Gene: yjfA

Protein: Possible rRNA/tRNA methylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

AlphaFold DB: Q8DNE3 UniProt: Q8DNE3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 101-250