ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q8DNR8_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q8DNR8_F1_nD2

Q8DNR8_F1_nD2

UID: 003989598

AlphaFold

Range: 141-435
AlphaFold: AF-Q8DNR8
UniProt: Q8DNR8 (all domains)
Gene: sunL

Protein: 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) (16S rRNA m5C967 methyltransferase) (rRNA (cytosine-C(5)-)-methyltransferase RsmB)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltr_RsmB-F →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltr_RsmB-F(2003.1.5.6)

Pfam Families

PF01189Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q8DNR8 UniProt: Q8DNR8

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 141-435