ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q46898_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q46898_F1_nD1

Q46898_F1_nD1

UID: 004007166

AlphaFold

Range: 1-85,106-220
AlphaFold: AF-Q46898
UniProt: Q46898 (all domains)
Gene: casD

Protein: CRISPR system Cascade subunit CasD

3D Structure

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Related Domains

Browse other domains in Cas_Cas5d →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR system Cas5 homologs(304.158)

TT-groupCRISPR system Cas5 homologs(304.158.1)

FFamilyCas_Cas5d(304.158.1.2)

Pfam Families

PF09704Cas_Cas5d

CRISPR-associated protein (Cas_Cas5)

ClanCL0362RAMPS-Cas5-like

External Links

AlphaFold DB: Q46898 UniProt: Q46898

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-85,106-220