ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A175VRK6_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A175VRK6_F1_nD1

A0A175VRK6_F1_nD1

UID: 004016275

AlphaFold

Range: 11-685
AlphaFold: AF-A0A175VRK6
UniProt: A0A175VRK6 (all domains)
Gene: MMYC01_208724

Protein: Pre-mRNA-splicing factor clf-1

3D Structure

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Related Domains

Browse other domains in HAT, TPR_14, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyHAT, TPR_14, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C(109.4.1.2191)

Pfam Families

HAT (Half-A-TPR) repeat

ClanCL0020TPR

Tetratricopeptide repeat

ClanCL0020TPR

Tetratricopeptide repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

External Links

AlphaFold DB: A0A175VRK6 UniProt: A0A175VRK6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-685

TPR

PF23233HAT_Syf1_CNRKL1_N

Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

ClanCL0020TPR

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

ClanCL0020TPR

PF23241HAT_PRP39_C

PRP39 C-terminal HAT repeat

ClanCL0020TPR